importPurityStatsPURPLE: Import the driver catalog as determined by HMF.
In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/import_purityStatsPURPLE.R
Description
Import the driver catalog as determined by HMF.
Usage
1
importPurityStatsPURPLE(pathStats)
Arguments
pathStats
(character): Path to the <sample>.purple.purity.tsv file containing HMF-determined drivers.
Value
(tibble) Tibble containing PURPLE statistics of the sample.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importLINXFusions(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD(),
performShatterSeek()
Examples
1
importPurityStatsPURPLE(pathStats = '<sample>.purple.purity.tsv')
J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/import_purityStatsPURPLE.R
Description
Import the driver catalog as determined by HMF.
Usage
1 | importPurityStatsPURPLE(pathStats)
|
Arguments
pathStats |
(character): Path to the <sample>.purple.purity.tsv file containing HMF-determined drivers. |
Value
(tibble) Tibble containing PURPLE statistics of the sample.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importLINXFusions(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD(),
performShatterSeek()
Examples
1 | importPurityStatsPURPLE(pathStats = '<sample>.purple.purity.tsv')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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