determineTiTv: Determine the number of Ti and Tv contexts and Ti/Tv ratio...
In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples
Description
Usage
Arguments
Value
Examples
View source: R/analysisWGS_determineTiTv.R
Description
Determine the number of Ti and Tv contexts and Ti/Tv ratio per sample.
Usage
1
determineTiTv(mutMatrix.SNV)
Arguments
mutMatrix.SNV
(matrix): Mutational motif matrix derived from the fitMutSigs function.
Value
(tibble) Returns a tibble of the Ti/Tv number and ratio per sample.
Examples
1
2
mutSigs <- R2CPCT::fitMutSigs(data.Cohort$somaticVariants, restrictiveFit = FALSE)
determineTiTv(mutSigs$SNV$mutMatrix)
J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/analysisWGS_determineTiTv.R
Description
Determine the number of Ti and Tv contexts and Ti/Tv ratio per sample.
Usage
1 | determineTiTv(mutMatrix.SNV)
|
Arguments
mutMatrix.SNV |
(matrix): Mutational motif matrix derived from the fitMutSigs function. |
Value
(tibble) Returns a tibble of the Ti/Tv number and ratio per sample.
Examples
1 2 | mutSigs <- R2CPCT::fitMutSigs(data.Cohort$somaticVariants, restrictiveFit = FALSE)
determineTiTv(mutSigs$SNV$mutMatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.