API for Japrin/sscClust
simpler single cell RNAseq data clustering
| Global functions | |
|---|---|
| .onLoad | Source code |
| FUN | Source code |
| binarizeExp | Man page |
| classify.outlier | Man page |
| classifyCell.by.model | Man page |
| classifyCell.by.sigGene | Man page |
| collapseEffectSizeLong | Man page |
| comb.pvalue | Man page |
| cor.BLAS | Man page |
| directEScombi | Man page |
| directEScombiFromLongTable | Man page |
| effectsize | Man page |
| expressedFraction | Man page |
| expressedFraction.HiExpressorMean | Man page |
| fftRtsne | Man page |
| findDEGenesByAOV | Man page Source code |
| findKneePoint | Man page Source code |
| geneID.homolog | Source code |
| getAUC | Man page |
| integrate.by.avg | Man page Source code |
| loginfo | Man page |
| mcrf | Man page |
| plotPairsCor | Man page |
| plotSigGene | Man page |
| rank.de.gene | Man page Source code |
| reexports | Man page |
| run.DE.matrix | Man page |
| run.KNN | Man page |
| run.RF | Man page |
| run.SC3 | Man page |
| run.SVM | Man page |
| run.cutree | Man page |
| run.cutreeDynamic | Man page |
| run.limma.matrix | Man page |
| run.tSNE | Man page |
| sce.Pollen | Man page |
| simple.removeBatchEffect | Man page |
| ssc.DEGene.limma | Man page Source code |
| ssc.assay.hclust | Man page |
| ssc.assay.zscore | Man page |
| ssc.average.cell | Man page |
| ssc.build | Man page |
| ssc.clust | Man page Source code |
| ssc.clustSubsamplingClassification | Man page Source code |
| ssc.clusterMarkerGene | Man page Source code |
| ssc.displayName2id | Man page |
| ssc.downsample | Man page |
| ssc.id2displayName | Man page |
| ssc.moduleScore | Man page |
| ssc.order | Man page |
| ssc.plot.GeneDensity | Man page |
| ssc.plot.cor | Man page |
| ssc.plot.heatmap | Man page |
| ssc.plot.pca | Man page |
| ssc.plot.silhouette | Man page |
| ssc.plot.tsne | Man page |
| ssc.plot.violin | Man page |
| ssc.reduceDim | Man page Source code |
| ssc.run | Man page Source code |
| ssc.scale | Man page |
| ssc.toLongTable | Man page |
| ssc.variableGene | Man page Source code |
