plotPairsCor: plot genes expression in pairs of clusters to examine the...

In Japrin/sscClust: simpler single cell RNAseq data clustering

plot genes expression in pairs of clusters to examine the correlation

Description

plot genes expression in pairs of clusters to examine the correlation

Usage

plotPairsCor(
  obj,
  assay.name,
  x.cluster,
  out.prefix,
  genes = NULL,
  gene.highlight = NULL,
  plot.ncol = 7,
  plot.width = 22,
  plot.height = 22
)

Arguments

obj	object; object of singleCellExperiment class
assay.name	character; which assay (default: "exprs")
x.cluster	character; cluster to be showed in x axis
out.prefix	character; output prefix.
genes	vector; genes to used to calculate the correlation and make the scatter plot (default: NULL)
gene.highlight	vector; genes to highlight (default: NULL)
plot.ncol	integer; number of columns in facet_wrap() (default: 7)
plot.width	double; width of the output plot (default: 22)
plot.height	double; height of the output plot (default: 22)

Details

used to examine the correlation between pairs of clusters

Japrin/sscClust documentation built on Dec. 15, 2022, 1:04 p.m.