API for Japrin/sscClust
simpler single cell RNAseq data clustering

Global functions
auto.colSet Man page Source code
auto.point.size Man page Source code
binarizeExp Man page
classify.outlier Man page
classifyCell.by.sigGene Man page Source code
cor.BLAS Man page Source code
error Source code
expressedFraction Man page Source code
expressedFraction.HiExpressorMean Man page Source code
fftRtsne Man page Source code
findDEGenesByAOV Man page Source code
findKneePoint Man page Source code
geneID.homolog Source code
getAUC Man page Source code
ggGeneOnTSNE Man page Source code
integrate.by.avg Man page Source code
loginfo Man page Source code
matrix.waterfall Man page
plot.branch Man page Source code
plot.density2D Man page Source code
plot.matrix.simple Man page Source code
plot.pairs.cor Man page
plotDistFromCellInfoTable Man page Source code
plotSigGene Man page Source code
rank.de.gene Man page Source code
run.KNN Man page Source code
run.RF Man page Source code
run.SC3 Man page Source code
run.SVM Man page Source code
run.cutreeDynamic Man page Source code
run.limma.matrix Man page Source code
run.tSNE Man page Source code
sce.Pollen Man page
simple.removeBatchEffect Man page
ssc.DEGene.limma Man page
ssc.assay.hclust Man page Source code
ssc.assay.zscore Man page Source code
ssc.average.cell Man page Source code
ssc.build Man page Source code
ssc.clust Man page Source code
ssc.clustSubsamplingClassification Man page Source code
ssc.clusterMarkerGene Man page
ssc.displayName2id Man page Source code
ssc.downsample Man page
ssc.id2displayName Man page Source code
ssc.moduleScore Man page
ssc.order Man page Source code
ssc.plot.heatmap Man page
ssc.plot.pca Man page
ssc.plot.silhouette Man page Source code
ssc.plot.tsne Man page Source code
ssc.plot.violin Man page
ssc.plotGeneDensity Man page
ssc.reduceDim Man page Source code
ssc.run Man page Source code
ssc.scale Man page
ssc.variableGene Man page Source code
Japrin/sscClust documentation built on Nov. 21, 2019, 5:49 a.m.