Files in Japrin/sscClust
simpler single cell RNAseq data clustering

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R R/integrate.R R/plotFunctions.R R/script_benchmark/pancreas_baron/ana.bbknn.R R/script_benchmark/pancreas_baron/ana.seurat3.R R/script_benchmark/pancreas_baron/ana.sscClust.R R/script_benchmark/pancreas_baron/baron.R R/script_benchmark/pancreas_baron/prepare.R R/sscClust.R R/utils.R README.md
appveyor.yml
data/sce.Pollen.rda
inst/doc/sscClust.Rmd
inst/doc/sscClust.html
inst/doc/sscClust.iCor.Rmd
inst/doc/sscClust.iCor.html
inst/extdata/Pollen.par.r
inst/extdata/TCell.d100.cellInfo.txt
inst/extdata/TCell.d100.sigG.exp.txt.gz
man/auto.colSet.Rd man/auto.point.size.Rd man/binarizeExp.Rd man/classify.outlier.Rd man/classifyCell.by.sigGene.Rd man/cor.BLAS.Rd man/expressedFraction.HiExpressorMean.Rd man/expressedFraction.Rd man/fftRtsne.Rd man/findDEGenesByAOV.Rd man/findKneePoint.Rd man/getAUC.Rd man/ggGeneOnTSNE.Rd man/integrate.by.avg.Rd man/loginfo.Rd man/matrix.waterfall.Rd man/plot.branch.Rd man/plot.density2D.Rd man/plot.matrix.simple.Rd man/plot.pairs.cor.Rd man/plotDistFromCellInfoTable.Rd man/plotSigGene.Rd man/rank.de.gene.Rd man/run.KNN.Rd man/run.RF.Rd man/run.SC3.Rd man/run.SVM.Rd man/run.cutreeDynamic.Rd man/run.limma.matrix.Rd man/run.tSNE.Rd man/sce.Pollen.Rd man/simple.removeBatchEffect.Rd man/ssc.DEGene.limma.Rd man/ssc.assay.hclust.Rd man/ssc.assay.zscore.Rd man/ssc.average.cell.Rd man/ssc.build.Rd man/ssc.clust.Rd man/ssc.clustSubsamplingClassification.Rd man/ssc.clusterMarkerGene.Rd man/ssc.displayName2id.Rd man/ssc.downsample.Rd man/ssc.id2displayName.Rd man/ssc.moduleScore.Rd man/ssc.order.Rd man/ssc.plot.heatmap.Rd man/ssc.plot.pca.Rd man/ssc.plot.silhouette.Rd man/ssc.plot.tsne.Rd man/ssc.plot.violin.Rd man/ssc.plotGeneDensity.Rd man/ssc.reduceDim.Rd man/ssc.run.Rd man/ssc.scale.Rd man/ssc.variableGene.Rd
sscClust.Rproj
vignettes/sscClust.Rmd
vignettes/sscClust.html
vignettes/sscClust.iCor.Rmd
vignettes/sscClust.iCor.html
Japrin/sscClust documentation built on Nov. 21, 2019, 5:49 a.m.