Files in Japrin/sscClust
simpler single cell RNAseq data clustering
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/integrate.R
R/script_benchmark/pancreas_baron/ana.bbknn.R
R/script_benchmark/pancreas_baron/ana.seurat3.R
R/script_benchmark/pancreas_baron/ana.sscClust.R
R/script_benchmark/pancreas_baron/baron.R
R/script_benchmark/pancreas_baron/prepare.R
R/sscClust.R
R/utils.R
R/zzz.R
README.md
appveyor.yml
data/sce.Pollen.rda
inst/doc/sscClust.Rmd
inst/doc/sscClust.html
inst/doc/sscClust.iCor.Rmd
inst/doc/sscClust.iCor.html
inst/extdata/Pollen.par.r
inst/extdata/TCell.d100.cellInfo.txt
inst/extdata/TCell.d100.sigG.exp.txt.gz
man/binarizeExp.Rd
man/classify.outlier.Rd
man/classifyCell.by.model.Rd
man/classifyCell.by.sigGene.Rd
man/comb.pvalue.Rd
man/expressedFraction.HiExpressorMean.Rd
man/expressedFraction.Rd
man/fftRtsne.Rd
man/findDEGenesByAOV.Rd
man/findKneePoint.Rd
man/getAUC.Rd
man/integrate.by.avg.Rd
man/mcrf.Rd
man/plotPairsCor.Rd
man/plotSigGene.Rd
man/rank.de.gene.Rd
man/reexports.Rd
man/run.DE.matrix.Rd
man/run.KNN.Rd
man/run.RF.Rd
man/run.SC3.Rd
man/run.SVM.Rd
man/run.limma.matrix.Rd
man/run.tSNE.Rd
man/sce.Pollen.Rd
man/ssc.DEGene.limma.Rd
man/ssc.clust.Rd
man/ssc.clustSubsamplingClassification.Rd
man/ssc.clusterMarkerGene.Rd
man/ssc.reduceDim.Rd
man/ssc.run.Rd
man/ssc.variableGene.Rd
sscClust.Rproj
vignettes/sscClust.Rmd
vignettes/sscClust.html
vignettes/sscClust.iCor.Rmd
vignettes/sscClust.iCor.html
