getAUC: calculate the AUC of one gene, using it as a classifier. code...

In Japrin/sscClust: simpler single cell RNAseq data clustering

calculate the AUC of one gene, using it as a classifier. code from SC3

Description

calculate the AUC of one gene, using it as a classifier. code from SC3

Usage

getAUC(gene, labels, use.rank = T, geneID = "GeneX", method.Max = "mean")

Arguments

gene	numeric; expression profile of one gene across samples
labels	character; clusters of the samples belong to
use.rank	logical; using the expression value itself or convert to rank value. (default: TRUE)
geneID	character; geneID
method.Max	character; method to find highest group, one of "mean", "median", "rank.mean" (default: mean)

Japrin/sscClust documentation built on Dec. 15, 2022, 1:04 p.m.