Man pages for LihuaJulieZhu/CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
| annotateOffTargets | annotate off targets |
| buildFeatureVectorForScoring | Build feature vectors |
| calculategRNAEfficiency | Calculate gRNA Efficiency |
| compare2Sequences | Compare 2 input sequences/sequence sets for possible guide... |
| CRISPRseek-package | Design of target-specific guide RNAs (gRNAs) in CRISPR-Cas9,... |
| deepCpf1 | DeepCpf1 Algorithm for predicting CRISPR-Cpf1 gRNA Efficacy |
| filtergRNAs | Filter gRNAs |
| filterOffTarget | filter off targets and generate reports. |
| findgRNAs | Find potential gRNAs |
| getOfftargetScore | Calculate score for each off target |
| isPatternUnique | Output whether the input patterns occurs only once in the... |
| offTargetAnalysis | Design target-specific guide RNAs for CRISPR-Cas9 system in... |
| offTargetAnalysisWithoutBSgenome | Design of target-specific guide RNAs for CRISPR-Cas9 system... |
| predictRelativeFreqIndels | Predict insertions and deletions induced by CRISPR/Cas9... |
| searchHits | Search for off targets in a sequence as DNAString |
| searchHits2 | Search for off targets |
| translatePattern | translate pattern from IUPAC Extended Genetic Alphabet to... |
| uniqueREs | Output restriction enzymes that recognize only the gRNA... |
| writeHits | Write the hits of sequence search from a sequence to a file |
| writeHits2 | Write the hits of sequence search to a file |
