Man pages for LihuaJulieZhu/CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems

annotateOffTargetsannotate off targets
buildFeatureVectorForScoringBuild feature vectors
calculategRNAEfficiencyCalculate gRNA Efficiency
compare2SequencesCompare 2 input sequences/sequence sets for possible guide...
CRISPRseek-packageDesign of target-specific guide RNAs (gRNAs) in CRISPR-Cas9,...
filtergRNAFilter gRNAs
filterOffTargetfilter off targets and generate reports.
findgRNAsFind potential gRNAs
getOfftargetScoreCalculate score for each off target
isPatternUniqueOutput whether the input patterns occurs only once in the...
offTargetAnalysisDesign of target-specific guide RNAs for CRISPR-Cas9 system...
searchHitsSearch for off targets in a sequence as DNAString
searchHits2Search for off targets
translatePatterntranslate pattern from IUPAC Extended Genetic Alphabet to...
uniqueREsOutput restriction enzymes that recognize only the gRNA...
writeHitsWrite the hits of sequence search from a sequence to a file
writeHits2Write the hits of sequence search to a file
LihuaJulieZhu/CRISPRseek documentation built on Oct. 12, 2018, 1:15 p.m.