Gen_enrichment: Gene list pathway analysis by hypergeometric test

In LittleHeronCodes/Lazy2: Lazy Package

Gene list pathway analysis by hypergeometric test

Description

Run pathway analysis (hypergeometric test) for gene list. Wrapper function for hypergeoTestForGeneset.

Usage

Gen_enrichment(glist, refgmt, tglist, minGeneSet = 10, ncore = 1, ef.psc = 0)

Arguments

glist	List of query genes. (DEG list)
refgmt	Reference gene set list. (Pathway set in list form)
tglist	List of background gene space, same length as glist.
minGeneSet	Minimum number of genes in gene set. Default 10.
ncore	Number of cores to use.
ef.psc	Pseudocount option for calculating enrichment factors. Default 0.

Value

List of enricher Object: up, down

LittleHeronCodes/Lazy2 documentation built on April 20, 2024, 11:24 p.m.