drawMA: Draw MA, volcano plot

In LittleHeronCodes/Lazy2: Lazy Package

Draw MA, volcano plot

Description

Draw MA plot from resultDF generated from limma (data.frame format). DESeq2 results should have column names matching limma.

Usage

drawMA(resultDF, qco, fco, ttl_pre, ylim = NULL)

drawVol(resultDF, qco, fco, ttl_pre, xlim = NULL)

Arguments

resultDF	result dataframe generated from limma or DEseq2. If DESeq2, column name should be 'adj.P.Val','logFC','AveExpr'
qco	adjusted p value cut off
fco	fold change cut off
ttl_pre	main title prefix
ylim	y-axis limit
xlim	x-axis limit

Value

plot

Functions

• drawVol(): Draw volcano plot

Examples

## Not run: 
drawMA(resultDF, qco = 0.1, fco = 2.0, ttl_pre = "title")

## End(Not run)

LittleHeronCodes/Lazy2 documentation built on April 20, 2024, 11:24 p.m.