enrichmentFactorForDataFrame: CMAP Style Enrichment Calculation
In LittleHeronCodes/Lazy2: Lazy Package
View source: R/CMAP_style_gsea.R
enrichmentFactorForDataFrame R Documentation
CMAP Style Enrichment Calculation
Description
Calculate enrichment factor from a dataframe by rank cutoff.
Usage
enrichmentFactorForDataFrame(
data,
enrich_element,
rank_by,
cutoff = 0.05,
min_count = 3,
psc = 1
)
Arguments
data
input data frame
enrich_element
category column from data to enrich
rank_by
column used to sort rank
cutoff
cut percentile. default 0.05
min_count
minimum count to be valid. default 3
psc
pseudocount when caclulating enrichment. default 1
Value
dataframe of named vectors for each category
LittleHeronCodes/Lazy2 documentation built on Jan. 26, 2024, 2:01 p.m.
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View source: R/CMAP_style_gsea.R
| enrichmentFactorForDataFrame | R Documentation |
CMAP Style Enrichment Calculation
Description
Calculate enrichment factor from a dataframe by rank cutoff.
Usage
enrichmentFactorForDataFrame(
data,
enrich_element,
rank_by,
cutoff = 0.05,
min_count = 3,
psc = 1
)
Arguments
data |
input data frame |
enrich_element |
category column from data to enrich |
rank_by |
column used to sort rank |
cutoff |
cut percentile. default 0.05 |
min_count |
minimum count to be valid. default 3 |
psc |
pseudocount when caclulating enrichment. default 1 |
Value
dataframe of named vectors for each category
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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