extractGeneList: Gene list extraction from result
In LittleHeronCodes/Lazy2: Lazy Package
View source: R/DEG_list_helper.R
extractGeneList R Documentation
Gene list extraction from result
Description
Get DEG list from list of results generated by limma or DESeq2.
Usage
extractGeneList(resultsLS, fco, qco, cnt = NULL, remove_ambi = FALSE)
Arguments
resultsLS
list of result data frames. (limma results default)
fco
fold change cut-offs (NOT LOG). Used to filter logFC column.
qco
adjusted p value cut-offs. Used to filter adj.P.Val column.
cnt
DEG count constrains (not used).
remove_ambi
Remove genes both in up and down?
Value
Nested list of DEGs
LittleHeronCodes/Lazy2 documentation built on April 20, 2024, 11:24 p.m.
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View source: R/DEG_list_helper.R
| extractGeneList | R Documentation |
Gene list extraction from result
Description
Get DEG list from list of results generated by limma or DESeq2.
Usage
extractGeneList(resultsLS, fco, qco, cnt = NULL, remove_ambi = FALSE)
Arguments
resultsLS |
list of result data frames. (limma results default) |
fco |
fold change cut-offs (NOT LOG). Used to filter logFC column. |
qco |
adjusted p value cut-offs. Used to filter adj.P.Val column. |
cnt |
DEG count constrains (not used). |
remove_ambi |
Remove genes both in up and down? |
Value
Nested list of DEGs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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