readGMT: readGMT

In LittleHeronCodes/Lazy2: Lazy Package

readGMT

Description

gmt file reader. A GMT file format is a tab delimited text file containing gene sets. Each line should contain one geneset, delimited by tab. Genes should start from 3rd field.

Usage

readGMT(gmtfile, as.df = FALSE)

writeGMT(gmtfile, genelist, geneset_desc = "")

Arguments

gmtfile	GMT file path
as.df	Return as data frame?
genelist	List of gene set. Should be un-nested level one named list.
geneset_desc	Description meta information for gene set. Either length one or a named vector of same length as glist.

Value

Gene set dataframe of 2 column or list

Functions

• writeGMT(): write gmt file for geneset list.

Examples

## Not run: 
readGMT("file/path.gmt")

## End(Not run)

LittleHeronCodes/Lazy2 documentation built on April 20, 2024, 11:24 p.m.