API for MCorentin/vargen
Fetching Variants Related to Phenotypes Using Public Databases
| Global functions | |
|---|---|
| annotate_variants | Man page Source code |
| connect_to_gene_ensembl | Man page Source code |
| connect_to_snp_ensembl | Man page Source code |
| convert_gtex_to_rsids | Man page Source code |
| create_gwas | Man page Source code |
| format_chr | Man page Source code |
| format_output | Man page Source code |
| get_fantom5_enhancers_from_hgnc | Man page Source code |
| get_fantom5_variants | Man page Source code |
| get_genes_variants | Man page Source code |
| get_gtex_variants | Man page Source code |
| get_gwas_variants | Man page Source code |
| get_omim_genes | Man page Source code |
| get_phenotype_terms | Man page Source code |
| get_variants_from_locations | Man page Source code |
| get_variants_from_phenotypes | Man page Source code |
| list_gtex_tissues | Man page Source code |
| list_gwas_traits | Man page Source code |
| list_omim_accessions | Man page Source code |
| plot_manhattan_gwas | Man page Source code |
| prepare_fantom | Man page Source code |
| select_gtex_tissues | Man page Source code |
| vargen_custom | Man page Source code |
| vargen_install | Man page Source code |
| vargen_pipeline | Man page Source code |
| vargen_visualisation | Man page Source code |
