Files in MCorentin/vargen
Fetching Variants Related to Phenotypes Using Public Databases
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/VarGen.R
R/fantom.R
R/gtex.R
R/gwas.R
R/omim.R
R/utils.R
R/varphen.R
README.md
images/Example_output_VarGen.PNG
images/Example_output_VarPhen.PNG
images/SIM1_ENSG00000112246_GVIZ.png
images/SIM1_ENSG00000112246_GVIZ_highlighted.png
images/VarGen_workflow.png
images/VarPhen_workflow.png
images/manhattan_alzheimer.png
man/annotate_variants.Rd
man/connect_to_gene_ensembl.Rd
man/connect_to_snp_ensembl.Rd
man/convert_gtex_to_rsids.Rd
man/create_gwas.Rd
man/format_chr.Rd
man/format_output.Rd
man/get_fantom5_enhancers_from_hgnc.Rd
man/get_fantom5_variants.Rd
man/get_genes_variants.Rd
man/get_gtex_variants.Rd
man/get_gwas_variants.Rd
man/get_omim_genes.Rd
man/get_phenotype_terms.Rd
man/get_variants_from_locations.Rd
man/get_variants_from_phenotypes.Rd
man/list_gtex_tissues.Rd
man/list_gwas_traits.Rd
man/list_omim_accessions.Rd
man/plot_manhattan_gwas.Rd
man/prepare_fantom.Rd
man/select_gtex_tissues.Rd
man/vargen_custom.Rd
man/vargen_install.Rd
man/vargen_pipeline.Rd
man/vargen_visualisation.Rd
vargen.Rproj
