Man pages for MPE-Lab/TIPC
Tumor-Immune Partitioning and Clustering (test)
| cell_data | Cell spatial data. |
| consensus_clustering | Clustering of TIPC metrics |
| count_TIPC_cat | TIPC spatial metric counting |
| density_data | Tumor denisty data. |
| multiple_hexLen_count_TIPC_cat | A wrapper function of 'count_TIPC_cat' |
| multiple_hexLen_tessellation | A wrapper function of 'tessellation' |
| normalize_metrics | Normalization of TIPC spatial metrics |
| plot_TIPC_heatmap | Heat-map of TIPC metric color-coded by clustering results |
| plot_TIPC_heatmap_overlayDens | Heat-map of TIPC metric color-coded by clustering results |
| postTIPC_SurvivalAnalysis | Heat-map of TIPC metric color-coded by clustering results |
| surv_data | Clinical outcome and clinicopathological data. |
| tessellated_res | Tesselated data. |
| tessellation | Cell space tessellation into hexagonal sub-regions |
| TIPC_counts | TIPC count data. |
| TIPC_metrics | TIPC normalized metric data. |
| TIPC-package | An R package for Tumor-immune Partitioning and Clustering... |
| trend_plot_hexLen | Trend plot of grid size effect |
| trend_plot_shiftDirection | Trend plot of grid shifting effect |
| trend_plot_tinyClusters | Trend plot of outlier clusteres |
