TIPC_metrics: TIPC normalized metric data.

In MPE-Lab/TIPC: Tumor-Immune Partitioning and Clustering (test)

Description

A data frame containing the normalized TIPC counts with all 5 directions concatenated.

Usage

TIPC_metrics

Format

A data frame containing 50 rows (i.e. tumors) and 30 variables (6 TIPC metrics x 5 directions):

tumor_ONLY_O

fractions of sub-region containing tumor cell only, center

Stroma_ONLY_O

fractions of sub-region containing stromal cell only, center

I2Tu_high_O

fractions of sub-region containing immune & tumor cells and I:T ratio > global I:T, center

I2Tu_low_O

fractions of sub-region containing immune & tumor cells and I:T ratio < global I:T, center

I2S_high_O

fractions of sub-region containing immune & tumor cells and I:S ratio > global I:S, center

I2S_low_O

fractions of sub-region containing immune & tumor cells and I:S ratio < global I:S, center

tumor_ONLY_L

fractions of sub-region containing tumor cell only, left

Stroma_ONLY_L

fractions of sub-region containing stromal cell only, left

I2Tu_high_L

fractions of sub-region containing immune & tumor cells and I:T ratio > global I:T, left

I2Tu_low_L

fractions of sub-region containing immune & tumor cells and I:T ratio < global I:T, left

I2S_high_L

fractions of sub-region containing immune & tumor cells and I:S ratio > global I:S, left

I2S_low_L

fractions of sub-region containing immune & tumor cells and I:S ratio < global I:S, left

tumor_ONLY_R

fractions of sub-region containing tumor cell only, right

Stroma_ONLY_R

fractions of sub-region containing stromal cell only, right

I2Tu_high_R

fractions of sub-region containing immune & tumor cells and I:T ratio > global I:T, right

I2Tu_low_R

fractions of sub-region containing immune & tumor cells and I:T ratio < global I:T, right

I2S_high_R

fractions of sub-region containing immune & tumor cells and I:S ratio > global I:S, right

I2S_low_R

fractions of sub-region containing immune & tumor cells and I:S ratio < global I:S, right

tumor_ONLY_U

fractions of sub-region containing tumor cell only, upper

Stroma_ONLY_U

fractions of sub-region containing stromal cell only, upper

I2Tu_high_U

fractions of sub-region containing immune & tumor cells and I:T ratio > global I:T, upper

I2Tu_low_U

fractions of sub-region containing immune & tumor cells and I:T ratio < global I:T, upper

I2S_high_U

fractions of sub-region containing immune & tumor cells and I:S ratio > global I:S, upper

I2S_low_U

fractions of sub-region containing immune & tumor cells and I:S ratio < global I:S, upper

tumor_ONLY_D

fractions of sub-region containing tumor cell only, lower

Stroma_ONLY_D

fractions of sub-region containing stromal cell only, lower

I2Tu_high_D

fractions of sub-region containing immune & tumor cells and I:T ratio > global I:T, lower

I2Tu_low_D

fractions of sub-region containing immune & tumor cells and I:T ratio < global I:T, lower

I2S_high_D

fractions of sub-region containing immune & tumor cells and I:S ratio > global I:S, lower

I2S_low_D

fractions of sub-region containing immune & tumor cells and I:S ratio < global I:S, lower

MPE-Lab/TIPC documentation built on Sept. 17, 2021, 6:33 p.m.