multiple_hexLen_tessellation: A wrapper function of 'tessellation'

In MPE-Lab/TIPC: Tumor-Immune Partitioning and Clustering (test)

Description

A wrapper function to run tessellation at various hexagonal lengths.

Usage

multiple_hexLen_tessellation(
  cell_data = NULL,
  output_dir = NULL,
  hex_len_range = c(40, 60),
  hex_len_stepsize = 10
)

Arguments

cell_data	A data.frame of cell data of size rxc; r = total cells across all tumors and cores, 5 columns named as 'Phenotype', 'X', 'Y', 'tumor_ids', 'core_ids'. NOTE. 'tumor_ids' & 'core_ids' contain no-space and no underscore
output_dir	A directory path for results saving.
hex_len_range	A vector of 2 integer number indicating the range of hexagonal length.
hex_len_stepsize	An integer indicating the step size of hexagonal length.

Value

A list contain all 5 directional sub-region count of 6 TIPC category.

MPE-Lab/TIPC documentation built on Sept. 17, 2021, 6:33 p.m.