trend_plot_tinyClusters: Trend plot of outlier clusteres
In MPE-Lab/TIPC: Tumor-Immune Partitioning and Clustering (test)

View source: R/trend_plot_tinyClusters.r

Plotting the number of tiny clusters and unclassified cases as the subregional size (hex_len) and different number of clusters (k) are used.

trend_plot_tinyClusters(
  root_dir = NULL,
  hex_len_range = NULL,
  hex_len_stepsize = NULL,
  output_dir = NULL,
  pdf_width = 12,
  pdf_height = 8,
  min_cluster_size = 30,
  clustering_subfolder_nm = "ConsensusClusterPlus_test"
)

`root_dir`	A directory path pointing to the parent directory of the ouptput folders containing TIPC metric counts generated by `count_TIPC_cat` at various hexagonal lengths.
`hex_len_range`	A vector of 2 integer number indicating the range of hexagonal length. If unspecified (NULL), all found TIPC result folders of different hexagonal lengths will be processed.
`hex_len_stepsize`	An integer indicating the step size of hexagonal length. If unspecified (NULL), all found TIPC result folders of different hexagonal lengths will be processed.
`output_dir`	A directory path for saving output plot; if NULL, plots will be saved in root_dir
`pdf_width, pdf_height`	the width and height of the graphics region in inches. The default values are 18 and 12; inherited from `pdf`
`min_cluster_size`	An integer indicating the minimum size of TIPC cluster to be tested for survival analysis; default 10.
`clustering_subfolder_nm`	A character string indicating the subfolder name containing the TIPC clustering results within each hex_len.