plot_TIPC_heatmap: Heat-map of TIPC metric color-coded by clustering results

In MPE-Lab/TIPC: Tumor-Immune Partitioning and Clustering (test)

Description

Plotting heat-maps of TIPC metric clustering results of all k's unless it is specified; using R package Heatmap

Usage

plot_TIPC_heatmap(
  root_dir = NULL,
  one_k = NULL,
  clustering_subfolder_nm = NULL
)

Arguments

root_dir	A directory path containing (1) the TIPC_metrics, i.e. normalized TIPC metrics of all 5 directions output from normalize_metrics; (2) the result folder of TIPC clustering results output from consensus_clustering.
one_k	An integer specifying the cluster number selected for heat-map plotting; otherwise all k's found under TIPC_cluster_dir will be processed.
clustering_subfolder_nm	A character string of sub-folder name generated during consensus_clustering, parked under root_dir.

MPE-Lab/TIPC documentation built on Sept. 17, 2021, 6:33 p.m.