plot_TIPC_heatmap_overlayDens: Heat-map of TIPC metric color-coded by clustering results

Description Usage Arguments

View source: R/plot_TIPC_heatmap_overlayDens.R

Description

Plotting heat-maps of TIPC metric clustering results of all k's unless it is specified; using R package Heatmap

Usage

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plot_TIPC_heatmap_overlayDens(
  root_dir = NULL,
  one_k = NULL,
  clustering_subfolder_nm = NULL,
  density_data = NULL
)

Arguments

root_dir

A directory path containing (1) the TIPC_metrics, i.e. normalized TIPC metrics of all 5 directions output from normalize_metrics; (2) the result folder of TIPC clustering results output from consensus_clustering.

one_k

An integer specifying the cluster number selected for heat-map plotting; otherwise all k's found under TIPC_cluster_dir will be processed.

clustering_subfolder_nm

A character string of sub-folder name generated during consensus_clustering, parked under root_dir.

density_data

A data.frame containing the tumor-level density data of no. of rows equals to no. of cases/tumors (tumor_ids in row.names), each column represents the density values of a specific cell-type.


MPE-Lab/TIPC documentation built on Sept. 17, 2021, 6:33 p.m.