deepblue_list_genes: list_genes

Description Usage Arguments Value See Also Examples

View source: R/deepblue.R

Description

List the Genes currently available in DeepBlue.

Usage

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deepblue_list_genes(genes = NULL, go_terms = NULL, chromosome = NULL,
  start = NULL, end = NULL, gene_model = NULL,
  user_key = deepblue_options("user_key"))

Arguments

genes

- A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).)

go_terms

- A string or a vector of string (gene ontology terms - ID or label)

chromosome

- A string or a vector of string (chromosome name(s))

start

- A int (minimum start region)

end

- A int (maximum end region)

gene_model

- A string (the gene model)

user_key

- A string (users token key)

Value

genes - A array (genes names and its content)

See Also

Other Gene models and genes identifiers: deepblue_count_gene_ontology_terms, deepblue_list_gene_models, deepblue_select_genes

Examples

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deepblue_list_genes(
  chromosome="chr20",
  start=10000000,
  end=21696620,
gene_model='Gencode v22')

MPIIComputationalEpigenetics/DeepBlueR documentation built on Aug. 11, 2021, 4:12 p.m.