calcTotalTags: Calculate the total number of CAGE tags across samples.

In MalteThodberg/CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Description

For each CAGE library, calculate the total number of tags.

Usage

calcTotalTags(object, inputAssay = "counts", outputColumn = "totalTags")

Arguments

object	RangedSummarizedExperiment: CAGE data quantified at CTSS, cluster or gene-level.
inputAssay	character: Name of assay holding input expression values.
outputColumn	character: Name of column in colData to hold number of total tags.

Value

object with total tags per library added as a column in colData.

See Also

Other Calculation functions: calcBidirectionality(), calcComposition(), calcPooled(), calcShape(), calcSupport(), calcTPM(), subsetByBidirectionality(), subsetByComposition(), subsetBySupport()

Examples

data(exampleUnidirectional)
calcTotalTags(exampleUnidirectional)

MalteThodberg/CAGEfightR documentation built on Sept. 11, 2021, 4:42 a.m.