calcTotalTags: Calculate the total number of CAGE tags across samples.

Description Usage Arguments Value See Also Examples

View source: R/calc.R

Description

For each CAGE library, calculate the total number of tags.

Usage

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calcTotalTags(object, inputAssay = "counts",
  outputColumn = "totalTags")

Arguments

object

RangedSummarizedExperiment: CAGE data quantified at CTSS, cluster or gene-level.

inputAssay

character: Name of assay holding input expression values.

outputColumn

character: Name of column in colData to hold number of total tags.

Value

object with total tags per library added as a column in colData.

See Also

Other Calculation functions: calcBidirectionality, calcComposition, calcPooled, calcShape, calcSupport, calcTPM, subsetByBidirectionality, subsetByComposition, subsetBySupport

Examples

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MalteThodberg/CAGEfightR documentation built on Oct. 24, 2018, 12:10 p.m.