Subset of the CAGE dataset from the paper 'Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo'. CTSS data from subsets of chr18 and chr19 across 3 mouse (mm9 ) samples are included. Datasets can be loaded with the data function.
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Example data from various stages of CAGEfightR:
DataFrame: Description of samples, including .bw filenames
RangedSummarizedExperiment: Unidirectional or Tag Clusters
RangedSummarizedExperiment: Bidirectional clusters
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