exampleDesign: Example CAGE Data

Description Usage Format Source Examples

Description

Subset of the CAGE dataset from the paper 'Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo'. CTSS data from subsets of chr18 and chr19 across 3 mouse (mm9 ) samples are included. Datasets can be loaded with the data function.

Usage

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Format

Example data from various stages of CAGEfightR:

exampleDesign

DataFrame: Description of samples, including .bw filenames

exampleCTSS

RangedSummarizedExperiment: CTSSs

exampleUnidirectional

RangedSummarizedExperiment: Unidirectional or Tag Clusters

exampleBidirectionalCluster

RangedSummarizedExperiment: Bidirectional clusters

exampleGenes

RangedSummarizedExperiment: Genes

Source

http://pubs.acs.org/doi/abs/10.1021/acsnano.6b07533

Examples

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MalteThodberg/CAGEfightR documentation built on May 8, 2019, 3:36 p.m.