swapScores: Swap scores in SummarizedExperiment

Description Usage Arguments Value See Also Examples

Description

Take scores for a specific sample and a specific assay and put them into rowData.

Usage

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swapScores(object, outputColumn = "score", inputAssay, sample)

Arguments

object

SummarizedExperiment: CAGE-data

outputColumn

character: Column in rowData to to hold swapped in scores.

inputAssay

character: Name of assay to take scores from.

sample

character: Name of sample to take scores from.

Value

SummarizedExperiment with sample scores from inputAssay in rowRata.

See Also

Other Swapping functions: swapRanges

Examples

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data(exampleCTSSs)
sample_names <- colnames(exampleCTSSs)

# Replace scores with values from the first sample:
x <- swapScores(exampleCTSSs, inputAssay='counts', sample=sample_names[1])
rowRanges(x)

MalteThodberg/CAGEfightR documentation built on May 8, 2019, 3:36 p.m.