shapeEntropy: Shape statistic: Shannon Entropy

Description Usage Arguments Value See Also Examples

View source: R/shape.R

Description

Calculates the Shannon Entropy (base log2) for a vector. Zeros are removed before calculation.

Usage

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Arguments

x

numeric Rle vector: Coverage series.

Value

Numeric.

See Also

Other Shape functions: calcShape, shapeIQR, shapeMultimodality

Examples

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# Hypothetical shard/broad clusters:
x_sharp <- Rle(c(1,1,1,4,5,2,1,1))
x_broad <- Rle(c(1,2,3,5,4,3,2,1))

# Calculate Entropy
shapeEntropy(x_sharp)
shapeEntropy(x_broad)

# See calcShape for more usage examples

MalteThodberg/CAGEfightR documentation built on Oct. 24, 2018, 12:10 p.m.