shapeEntropy: Shape statistic: Shannon Entropy
In MalteThodberg/CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Description
Usage
Arguments
Value
See Also
Examples
Description
Calculates the Shannon Entropy (base log2) for a vector. Zeros are removed
before calculation.
Usage
1
shapeEntropy(x)
Arguments
x
numeric Rle vector: Coverage series.
Value
Numeric.
See Also
Other Shape functions:
calcShape(),
shapeIQR(),
shapeMean()
Examples
1
2
3
4
5
6
7
8
9
# Hypothetical shard/broad clusters:
x_sharp <- Rle(c(1,1,1,4,5,2,1,1))
x_broad <- Rle(c(1,2,3,5,4,3,2,1))
# Calculate Entropy
shapeEntropy(x_sharp)
shapeEntropy(x_broad)
# See calcShape for more usage examples
MalteThodberg/CAGEfightR documentation built on Sept. 11, 2021, 4:42 a.m.
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Description Usage Arguments Value See Also Examples
Description
Calculates the Shannon Entropy (base log2) for a vector. Zeros are removed before calculation.
Usage
1 | shapeEntropy(x)
|
Arguments
x |
numeric Rle vector: Coverage series. |
Value
Numeric.
See Also
Other Shape functions:
calcShape(),
shapeIQR(),
shapeMean()
Examples
1 2 3 4 5 6 7 8 9 | # Hypothetical shard/broad clusters:
x_sharp <- Rle(c(1,1,1,4,5,2,1,1))
x_broad <- Rle(c(1,2,3,5,4,3,2,1))
# Calculate Entropy
shapeEntropy(x_sharp)
shapeEntropy(x_broad)
# See calcShape for more usage examples
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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