A convienient wrapper around calcTPM, calcPooled, tuneTagClustering, clusterUnidirectionally and quantifyClusters.
RangedSummarizedExperiment: Location and counts of CTSSs, usually found by calling quantifyCTSSs.
RangedSummarizedExperiment containing location and counts of TSSs
Other Wrapper functions:
# See the CAGEfightR vignette for an overview!
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