CorrHeatmap_pdf: Plot correlation heatmap in pdf

In Mathelab/IntLIM: Integration of Omics Data Using Linear Modeling

Plot correlation heatmap in pdf

Description

Plot correlation heatmap in pdf

Usage

CorrHeatmap_pdf(inputResults, viewer = T, top_pairs = 1200,
  treecuts = 2, palette = NULL)

Arguments

inputResults	IntLimResults object (output of ProcessResults())
viewer	whether the plot should be displayed in the RStudio viewer (T) or in Shiny/Knittr (F)
top_pairs	cutoff of the top pairs, sorted by adjusted p-values, to be plotted (plotting more than 1200 can take some time) (default: 1200)
treecuts	number of clusters (of gene-metabolite pairs) to cut the tree into for color-coding
palette	choose an RColorBrewer palette ("Set1", "Set2", "Set3", "Pastel1", "Pastel2", "Paired", etc.) or submit a vector of colors

Value

a highcharter object

Mathelab/IntLIM documentation built on July 9, 2022, 5:10 p.m.