getMetabList: Obtain lists of source IDs for inputting into RaMP or other...

In Mathelab/IntLIM: Integration of Omics Data Using Linear Modeling

Obtain lists of source IDs for inputting into RaMP or other pathway analysis program Requires sourceIDs and IDtypes Otherwise will output names given The IDtype should be as below
+————+
| IDtype |
+————+
| CAS |
| chebi |
| chemspider |
| hmdb |
| kegg |
| LIPIDMAPS |
| pubchem |
+————+

Description

Obtain lists of source IDs for inputting into RaMP or other pathway analysis program Requires sourceIDs and IDtypes Otherwise will output names given The IDtype should be as below
+————+
| IDtype |
+————+
| CAS |
| chebi |
| chemspider |
| hmdb |
| kegg |
| LIPIDMAPS |
| pubchem |
+————+

Usage

getMetabList(inputResults, inputData, outputMetab = "id")

Arguments

inputResults	results of IntLIM analysis
inputData	IntLIM dataset containing feature data
outputMetab	format of metabolites. Either names or a list of all metabolite ids. 'id' means source ID, 'name' means metabolite entry names, 'mapping' provides names and source IDs

Value

a list of source IDs or names for metabolites of interests

Mathelab/IntLIM documentation built on July 9, 2022, 5:10 p.m.