getGeneList: Obtain lists of source IDs for inputting into RaMP or other...

In Mathelab/IntLIM: Integration of Omics Data Using Linear Modeling

Obtain lists of source IDs for inputting into RaMP or other pathway analysis program Requires sourceIDs and IDtypes Otherwise will output names given The IDtype should be as below
+——————–+
| IDtype |
+——————–+
| enzymeNomenclature |
| ensembl |
| entrez |
| hmdb |
| kegg |
| uniprot |
+——————–+

Description

Obtain lists of source IDs for inputting into RaMP or other pathway analysis program Requires sourceIDs and IDtypes Otherwise will output names given The IDtype should be as below
+——————–+
| IDtype |
+——————–+
| enzymeNomenclature |
| ensembl |
| entrez |
| hmdb |
| kegg |
| uniprot |
+——————–+

Usage

getGeneList(inputResults, inputData, outputGene = "id")

Arguments

inputResults	results of IntLIM analysis
inputData	IntLIM dataset containing feature data
outputGene	format of genes. Either names or a list of all gene ids. 'id' means source ID, 'name' means gene entry names, 'mapping' provides names and source IDs

Value

a list of source IDs or names for genes of interests

Mathelab/IntLIM documentation built on July 9, 2022, 5:10 p.m.