Description Usage Arguments See Also
Extracts the data, the experimental design and the structure from the input files
1 2 3 | extractModelCore(model_structure, basal_activity, data_filename,
var_filename = "", dont_perturb = c(), dont_read = c(), MIN_CV = 0.1,
DEFAULT_CV = 0.3, rearrange = "no")
|
model_structure |
Matrix of links [node1, node2] |
basal_activity |
The node of the structure with a basal activity |
dont_perturb |
Perturbations to be removed for the fit, will not be used nor simulated. (vector of names) |
dont_read |
Readouts to be removed for the fit, will not be used nor simulated. (vector of names) |
MIN_CV |
Minimum coefficient of variation. |
DEFAULT_CV |
Default coefficient of variation to use when none is provided and there are no replicates in the data. |
rearrange |
Whether the rows should be rearranged. "no" to keep the order of the perturbations from the data file, "bystim" to group by stimulations, "byinhib" to group by inhibitions. |
datas |
Experimental data under the MIDAS format. See extractMIDAS. |
var_file |
Variation file name under MIDAS format or "" to compute an error from the data. See extractMIDAS. |
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