plotHeatmap: Plot a customized heatmap with a symmetrical scale that is...
In MathurinD/STASNet: Fit and Simulate Model from Perturbation Data

Description Usage Arguments Value Author(s)

Plot a customized heatmap with a symmetrical scale that is not stretched by extreme values

plotHeatmap(mat, main = "", lim = Inf, fixedRange = FALSE,
  stripOut = 0.05, col = colorRampPalette(c("deepskyblue", "white",
  "red1")), textCol = "gray10", sig_numbers = 2, show_values = TRUE,
  scale_rows = F)

`mat`	a numeric matrix that should be plotted
`main`	a character string representing the title to be passed
`lim`	a single number indicating the maximal range [-lim lim] for the color map
`fixedRange`	logical indicating whether the range of lim should at all means be kept (ensures comparability with other heatmaps)
`stripOut`	numeric between [0 1] to determine the range of colors (excluding outliers from distorting the colormap)
`col`	colorRampPalette object indicating the colormap
`textCol`	string denoting the color of inset text
`sig_numbers`	number of significant parameters to display in the heatmap
`show_values`	Whether the values should be printed in the heatmap boxes or not.
`scale_rows`	Transforms color code to show differences between columns by formula: x-rowmean/abs(rowmean)