Description Usage Arguments Value Author(s) See Also
Create the perturbation matrix for a set of perturbations, building all n-combinations of stimulators with all m-combinations of inhibitors. Add the cases with only stimulations and only inhibitions.
1 2 | getCombinationMatrix(perturbations, inhib_combo = 2, stim_combo = 1,
byStim = T)
|
perturbations |
A vector with the name of the perturbation, either NODE for a stimulation a node, or NODEi for its inhibition |
inhib_combo |
Number of inhibitions to use simultaneously in each perturbation |
stim_combo |
Number of stimulations to use simultaneously in each perturbation |
byStim |
Whether the perturbations should be ordered according to the stimulations or the inhibitions |
A perturbation matrix with the names of the nodes as columnnames
Mathurin Dorel dorel@horus.ens.fr
Other simulation: plotSimulation
,
simulateModel
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