Files in MathurinD/STASNet
Fit and Simulate Model from Perturbation Data

.TEMPLATEgitignore
.gitignore
AUTHORS
COPYING
ChangeLog
DESCRIPTION
INSTALL_INSTRUCTIONS.txt
NAMESPACE
NEWS
R/RcppExports.R R/compare_models.R R/create_model.R R/fitmodel.R R/generate_model.R R/helper_functions.R R/import_export.R R/model_manipulation.R R/model_set.R R/mra_model.R R/parameters_comparison.R R/plotHeatmap.R R/profile_likelihood.R R/simulation_model.R R/toy_data_generation.R R/zzz.R
README
TODO
cleanup
configure
inst/benchmark.R inst/build_simulated_data.R inst/fit_script.R inst/run_modelset.R
inst/unitTest/MIDAS.csv
inst/unitTest/adjacency.tab
inst/unitTest/basal_activity.dat
inst/unitTest/runit.test_model.R man/MRAmodel.Rd man/MRAmodelSet.Rd man/addLayerLinks.Rd man/addLink.Rd man/addPLinfos.Rd man/addVariableParameters.Rd man/aggregateDirectPaths.Rd man/cloneModel.Rd man/computeFitScore.Rd man/createDataSet.Rd man/createModel.Rd man/createModelSet.Rd man/createSimulation.Rd man/exportModel.Rd man/extractModelCore.Rd man/extractSubmodels.Rd man/extraction.Rd man/fitmodel.Rd man/generateToyDesign.Rd man/generateToyNetwork.Rd man/generate_infos.Rd man/getCombinationMatrix.Rd man/getDirectPaths.Rd man/getModelError.Rd man/getParametersNames.Rd man/getSamples.Rd man/getSimulation.Rd man/importModel.Rd man/initModel.Rd man/modelGroup.Rd man/mul_path.Rd man/niplotPL.Rd man/plotHeatmap.Rd man/plotModelAccuracy.Rd man/plotModelGraph.Rd man/plotModelParameters.Rd man/plotModelScores.MRAmodel.Rd man/plotModelScores.Rd man/plotModelScores.modelGroup.Rd man/plotModelSimulation.Rd man/plotNetworkGraph.Rd man/plotParameters.Rd man/plotParameters.modelGroup.Rd man/plotResiduals.Rd man/plotSimulation.Rd man/printParameters.Rd man/profileLikelihood.Rd man/readMIDAS.Rd man/readNetworkAdj.Rd man/rebuildModel.Rd man/refit.Rd man/refitWithVariableParameter.Rd man/selectMinimalModel.Rd man/setVariableParameters.Rd man/simulateModel.Rd man/suggestExtension.Rd man/testModel.Rd
src/Makevars.in
src/RcppExports.cpp
src/fitmodel_in_CPP.cpp
src/fitmodel_in_CPP.hpp
src/generate_response.cpp
src/generate_response.hpp
src/helper_types.cpp
src/helper_types.hpp
src/identifiability.cpp
src/identifiability.hpp
src/levmar-2.5/Axb.c
src/levmar-2.5/Axb_core.c
src/levmar-2.5/LICENSE
src/levmar-2.5/README.txt
src/levmar-2.5/compiler.h
src/levmar-2.5/expfit.c
src/levmar-2.5/levmar.h
src/levmar-2.5/lm.c
src/levmar-2.5/lm.h
src/levmar-2.5/lm_core.c
src/levmar-2.5/lmbc.c
src/levmar-2.5/lmbc_core.c
src/levmar-2.5/lmblec.c
src/levmar-2.5/lmblec_core.c
src/levmar-2.5/lmbleic.c
src/levmar-2.5/lmbleic_core.c
src/levmar-2.5/lmdemo.c
src/levmar-2.5/lmlec.c
src/levmar-2.5/lmlec_core.c
src/levmar-2.5/misc.c
src/levmar-2.5/misc.h
src/levmar-2.5/misc_core.c
src/mathtree.cpp
src/mathtree.hpp
src/model.cpp
src/model.hpp
src/modelset.cpp
src/modelset.hpp
src/modelstructure.cpp
src/modelstructure.hpp
src/modelwrapper.cpp
src/modelwrapper.hpp
src/rref.hpp
src/wrap_matrices.hpp
src/wrappers.cpp
tests/testthat.R
tests/testthat/basal.dat
tests/testthat/bestfit.rds
tests/testthat/data_error.rds
tests/testthat/data_stim_data.rds
tests/testthat/data_unstim_data.rds
tests/testthat/design_inhib_nodes.rds
tests/testthat/design_inhibitor.rds
tests/testthat/design_measured_nodes.rds
tests/testthat/design_stim_nodes.rds
tests/testthat/design_stimuli.rds
tests/testthat/dumb_basal.dat
tests/testthat/header.csv
tests/testthat/model.mra
tests/testthat/ms_bestfit.rds
tests/testthat/ms_data_error.rds
tests/testthat/ms_data_stim_data.rds
tests/testthat/ms_data_unstim_data.rds
tests/testthat/ms_structure_adjacencyMatrix.rds
tests/testthat/ms_structure_names.rds
tests/testthat/network.tab
tests/testthat/rscores.rds
tests/testthat/structure_adjacencyMatrix.rds
tests/testthat/structure_adjacencyMatrix_0.rds
tests/testthat/structure_adjacencyMatrix_1.rds
tests/testthat/structure_names.rds
tests/testthat/structure_names_0.rds
tests/testthat/structure_names_1.rds
tests/testthat/test_STASNet.R tests/testthat/test_extraction.R
tests/testthat/test_model_no_error_midas.csv
tests/testthat/test_model_no_error_midas_2.csv
tests/testthat/var_model1.mra
tests/testthat/var_model2.mra
vignettes/STASNet_vignette.Rmd
vignettes/custom.css
MathurinD/STASNet documentation built on Nov. 18, 2017, 7:53 a.m.