sampCorRnaMirna: sampCorRnaMirna sampling for correlation for miRNA and mRNA

In Mercedeh66/mirTarRnaSeq: mirTarRnaSeq

sampCorRnaMirna sampling for correlation for miRNA and mRNA

Description

This function uses the output of one2OneRnaMiRNA and returns a sampled from original file correlation dataframe depending on user sampling selection.

Usage

sampCorRnaMirna(
  mRNA,
  miRNA,
  method = "pearson",
  Shrounds = 100,
  Srounds = 1000
)

Arguments

mRNA	mRNA file generated from fold changes (FC) obj of the one2OneRnaMiRNA.
miRNA	miRNA file generated from fold changes (FC) obj of the one2OneRnaMiRNA.
method	Default is "pearson" else use "kendall" or "spearman".
Shrounds	number of shuffling over the FC data, default is 100.
Srounds	number of sampling from the shuffled data, default is 1000.

Value

Correlation data frame

Examples

x <- sampCorRnaMirna(mRNA_fc, miRNA_fc, method = "pearson", Shrounds = 10, Srounds = 10)

Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.