write_lab_releases: Write LAB Data Release

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Write LAB Data Release

Description

Write out LAB data releases. This function doesn't check whether data has been submitted according to guidelines; it assumes that the data has already been validated and is ready for release.

Usage

write_lab_releases(
  input_results_folder,
  folder_name = "motrpac_release",
  folder_root = NULL,
  version_file = "v1.0",
  verbose = TRUE
)

Arguments

input_results_folder	(character) Path to the PROCESSED_YYYYMMDD folder containing the LAB data.
folder_name	(character) Output folder name. Default is "motrpac_release".
folder_root	(character) Absolute path where the output folder will be created. Default is the current working directory.
version_file	(character) File version number (e.g., "v1.0"). Default is "v1.0".
verbose	(logical) If TRUE (default), displays messages during processing.

Value

Creates the BIC release folder and file structure: ⁠PHASE/OMICS/TCODE_NAME/ASSAY/⁠, and writes out files with names: motrpac_phase-code_tissuecode_assay_file-details-version.txt, where file-details can be:

• metadata-analyte,

• metadata-samples,

• results

Examples

## Not run: 
write_lab_releases(
   input_results_folder = "/full/path/to/PROCESSED_YYYYMMDD/")

## End(Not run)

MoTrPAC/MotrpacBicQC documentation built on April 11, 2025, 7:51 p.m.