write_olink_releases: Write olink data release

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Write olink data release

Description

Write out olink data releases. Doesn't check whether data has been submited according to guidelines

Usage

write_olink_releases(
  input_results_folder,
  folder_name = "motrpac_release",
  folder_root = NULL,
  version_file = "v1.0",
  verbose = TRUE
)

Arguments

input_results_folder	(char) Path to the RESULTS_YYYYMMDD folder
folder_name	(char) output folder name.
folder_root	(char) absolute path to write the output folder. Default: current directory
version_file	(char) file version number (v#.#)
verbose	(logical) TRUE (default) shows messages

Value

bic release folder/file structure ⁠PHASE/OMICS/TCODE_NAME/ASSAY/⁠ and file names, including:

• motrpac_phase-code_tissuecode_assay_file-details-version.txt where files-details can be:

• metadata-proteins,

• metadata-samples,

• results

Examples

## Not run: 
write_olink_releases(
   input_results_folder = "/full/path/to/RESULTS_YYYYMMDD/")

## End(Not run)

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.