LineageFeaturePlot: LineageFeaturePlot Plot Slingshot Curves

In Morriseylab/scExtras: Single cell data analysis helper functions

LineageFeaturePlot Plot Slingshot Curves

Description

LineageFeaturePlot Plot Slingshot Curves

Usage

LineageFeaturePlot(
  object,
  lineage = "lineage1",
  reduction = "umap",
  dims = 1:2,
  lo.col = "#0B1BE9",
  hi.col = "#F19F04",
  group.by = NULL
)

Arguments

object	Seurat object
reduction	Which dimensionality reduction to use, default UMAP
dims	Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions
lo.col	Low value color
hi.col	high value color
group.by	Cluster variable used in slingshot

Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.