RunLigRec: Get ligand receptor pairs between all clusters
In Morriseylab/scExtras: Single cell data analysis helper functions
RunLigRec R Documentation
Get ligand receptor pairs between all clusters
Description
Get ligand receptor pairs between all clusters
Usage
RunLigRec(object, group.by = "ident", org, perc = 30, assay = "RNA")
Arguments
object
Seurat object
group.by
grouping variable
org
organism
perc
minimum percentage of cells that should express the ligand or receptor
Value
Returns the object with object@misc[[ligrecres]] containing the matrix of lignad-receptor pair data
Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| RunLigRec | R Documentation |
Get ligand receptor pairs between all clusters
Description
Get ligand receptor pairs between all clusters
Usage
RunLigRec(object, group.by = "ident", org, perc = 30, assay = "RNA")
Arguments
object |
Seurat object |
group.by |
grouping variable |
org |
organism |
perc |
minimum percentage of cells that should express the ligand or receptor |
Value
Returns the object with object@misc[[ligrecres]] containing the matrix of lignad-receptor pair data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.