processExper: Preprocess single cell RNA-seq data with seurat and return...

In Morriseylab/scExtras: Single cell data analysis helper functions

Preprocess single cell RNA-seq data with seurat and return seurat object. This function only does normalization, finding variable genes and scaling

Description

Preprocess single cell RNA-seq data with seurat and return seurat object. This function only does normalization, finding variable genes and scaling

Usage

processExper(object, ccscale = F, return_var_genes = F, org)

Arguments

object	Seurat object
ccscale	Specify whether to scale for cell cycle genes or not
return_var_genes	Define if scale.data matrix should contain only the variable genes. T/F
organism	Organism (mouse/human)

Value

Seurat object

Examples

scrna = processExper(object=scrna,ccscale=F,sc.transform =F)

Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.