lineageDimPlot: lineageDimPlot Plot Slingshot Curves

In Morriseylab/scExtras: Single cell data analysis helper functions

lineageDimPlot Plot Slingshot Curves

Description

lineageDimPlot Plot Slingshot Curves

Usage

lineageDimPlot(
  object,
  reduction = "umap",
  group.by = NULL,
  lineage = "all",
  dims = 1:2,
  cols = NULL,
  label = T
)

Arguments

object	Seurat object
reduction	Reduction used
group.by	variable to group by
lineage	Linage to plot or all to plot all lineages
dims	Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions
cols	Color palette
label	Label plots

Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.