plotLineageHeatMap: Plot heatmap of the pseudotime data

In Morriseylab/scExtras: Single cell data analysis helper functions

Plot heatmap of the pseudotime data

Description

Plot heatmap of the pseudotime data

Usage

plotLineageHeatMap(
  object,
  features,
  lineage = "lineage1",
  col,
  group.by = NULL,
  features.callout = NULL,
  show_row_names = TRUE,
  show_heatmap_legend = TRUE
)

Arguments

object	Seurat object
features	Vector of genes to be plotted
lineage	THe linage to be plotted such as lineage1
col	Color palette, this vector needs to have the names be the cell types or cluster names
group.by	Cluster variable used in slingshot
features.callout	vector of gene names to be called out
show_row_names	T/F to show row names
show_heatmap_legend	T/F show legend

Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.