dnvTabToDNVcatalogue: Build a Dinucleotide Variants Catalogue from DNVs list

In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib

Build a Dinucleotide Variants Catalogue from DNVs list

Description

This function takes as input a list of dinucleotide variants (DNVs). It then annotates the DNVs and computes the DNV catalogues. The catalogues are in Zou's style.

Usage

dnvTabToDNVcatalogue(dnvtab)

Arguments

dnvtab

requires columns Sample, Chrom, Pos, Ref, Alt, with Ref and Alt of length 2

Value

list of annotated DNVs and DNV catalogue

References

J. E. Kucab, X. Zou, S. Morganella, M. Joel, A. S. Nanda, E. Nagy, C. Gomez, A. Degasperi, R. Harris, S. P. Jackson, V. M. Arlt, D. H. Phillips, S. Nik-Zainal. A Compendium of Mutational Signatures of Environmental Agents. Cell, https://doi.org/10.1016/j.cell.2019.03.001, 2019.

Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.