getGiniThresholds: Get Gini Thresholds

In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib

Get Gini Thresholds

Description

Given a matrix of mutational signatures and Gini threshold scaling factors, return the value of the thresholds.

Usage

getGiniThresholds(
  signatures,
  giniThresholdScaling,
  giniThresholdScaling_nmuts,
  verbose = TRUE
)

Arguments

signatures	matrix of mutational signatures, with signatures as columns and channels as rows
giniThresholdScaling	scaling factor for relative threshold (percentage of mutations)
giniThresholdScaling_nmuts	scaling factor for absolute threshold (number of mutations)

Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.