findKataegis: find kataegis
In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib
findKataegis R Documentation
find kataegis
Description
Given a table with a list of single nucleotide variants (SNVs) this function
identifies groups of SNVs that are narrowly clustered together, and that are
likely part of a kataegis. An annotated table of SNVs and a list of kataegis
regions are returned.
Usage
findKataegis(snvs_table, sample_name)
Arguments
snvs_table
table listing the single nucleotide variants to use. Necessary column names are: chr, position, REF, ALT.
sample_name
name of sample
Value
kataegis regions and annotated SNVs
Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.
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| findKataegis | R Documentation |
find kataegis
Description
Given a table with a list of single nucleotide variants (SNVs) this function identifies groups of SNVs that are narrowly clustered together, and that are likely part of a kataegis. An annotated table of SNVs and a list of kataegis regions are returned.
Usage
findKataegis(snvs_table, sample_name)
Arguments
snvs_table |
table listing the single nucleotide variants to use. Necessary column names are: chr, position, REF, ALT. |
sample_name |
name of sample |
Value
kataegis regions and annotated SNVs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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