findClosestCOSMIC30: Find closest COSMIC30 signatures
In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib
View source: R/signatures_utils.R
findClosestCOSMIC30 R Documentation
Find closest COSMIC30 signatures
Description
Compares a set of signatures to the COSMIC30 signatures and
returns the list of signatures identified. For example,
c("C1","C3","N1","C13","N2") means that Cosmic (C) signatures 1, 3 and 13 were found, while
signatures N1 and N2 are unknown signatures (N for not found), based on a similarity threshold (similarity >=threshold)
comparing to COSMIC30
Usage
findClosestCOSMIC30(sigs, threshold)
Arguments
sigs
matrix with 96-channel substitution signatures as columns
threshold
cosine similarity threshold
Value
the list of signatures identified
Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.
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View source: R/signatures_utils.R
| findClosestCOSMIC30 | R Documentation |
Find closest COSMIC30 signatures
Description
Compares a set of signatures to the COSMIC30 signatures and returns the list of signatures identified. For example, c("C1","C3","N1","C13","N2") means that Cosmic (C) signatures 1, 3 and 13 were found, while signatures N1 and N2 are unknown signatures (N for not found), based on a similarity threshold (similarity >=threshold) comparing to COSMIC30
Usage
findClosestCOSMIC30(sigs, threshold)
Arguments
sigs |
matrix with 96-channel substitution signatures as columns |
threshold |
cosine similarity threshold |
Value
the list of signatures identified
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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