getCOSMICSignatures: getCOSMICSignatures

In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib

getCOSMICSignatures

Description

This function returns the COSMIC signatures for a given mutation type.

Usage

getCOSMICSignatures(version = "latest", typemut = "subs", verbose = TRUE)

Arguments

version	this is either "latest", which is v3.2 for SBS and DBS, or it is possible to specify "2" in combination with typemut="subs" to obtain the old COSMIC 30 signatures. For rearrangements, this function only returns the 6 breast cancer rearr signatures from Nik-Zainal et al. 2016.
typemut	either subs, DNV or rearr

Value

reference signatures matrix

Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.