genesToBarcodes: Extracts Tumor Sample Barcodes where the given genes are...
In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

genesToBarcodes

R Documentation

Extracts Tumor Sample Barcodes where the given genes are mutated.

Description

Extracts Tumor Sample Barcodes where the given genes are mutated.

Usage

genesToBarcodes(maf, genes = NULL, justNames = FALSE, verbose = TRUE)

Arguments

`maf`	an `MAF` object generated by `read.maf`
`genes`	Hogo_Symbol for which sample names to be extracted.
`justNames`	if TRUE, just returns samples names instead of summarized tables.
`verbose`	Default TRUE

Value

list of data.tables with samples in which given genes are mutated.

Examples

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
genesToBarcodes(maf = laml, genes = 'DNMT3A')

PoisonAlien/maftools documentation built on April 7, 2024, 2:49 a.m.