getCytobandSummary: extract cytoband summary from GISTIC object
In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

getCytobandSummary

R Documentation

extract cytoband summary from GISTIC object

Description

extract cytoband summary from GISTIC object

Usage

getCytobandSummary(x)

## S4 method for signature 'GISTIC'
getCytobandSummary(x)

Arguments

`x`	An object of class GISTIC

Value

summarizied gistic results by altered cytobands.

Examples

all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
getCytobandSummary(laml.gistic)

PoisonAlien/maftools documentation built on Nov. 10, 2024, 6:01 p.m.